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Clusters
Selected IDs
Cluster ID:
Field definitions
- node_number
- The ID of the node - this is arbitary but referred to in the
parent_number
- parent_number
- The node ID of the parent
- most_recent_tip
- The date of the most recent tip in the cluster
- day_range
- Range in days between the oldest and youngest tip in the cluster
- recency
- How many days ago is the most recent tip (relative to the date of data generation)
- age
- How many days ago is the oldest tip in the cluster (relative to the date of data generation)
- tip_count
- The number of tips
- divergence_ratio
- The ratio of the stem divergence to the mean tip divergence
- mean_tip_divergence
- Average genetic distance in nucleotide changes from the root of the cluster to all of the tips
- stem_length
- Genetic distance in nucleotide changes from the stem branch of the cluster
- proportion_uk
- The proportion of tips from the UK
- admin0_count
- The number of different countries
- admin1_count
- The number of different admin 1 regions
- admin2_count
- The number of different admin 2 regions
- admin0_mode
- The modal admin0 location
- admin1_mode
- The modal admin1 location
- admin2_mode
- The modal admin2 location
- admin1_entropy
- The Shannon entropy for proportions of tips in admin1 locations
- admin2_entropy
- The Shannon entropy for proportions of tips in admin2 locations
- tips
- A list of the tips in the cluster